miRBase entry: ami-mir-101-1

Stem-loop ami-mir-101-1


Accession
MI0029711
Description
Alligator mississippiensis ami-mir-101-1 precursor miRNA


Sequence

acaggcugcccuggcUCAGUUAUCACAGUGCUGAUGCUgucuauucuaaaggUACAGUACUGUGAUAACUGAAGgauggcagccaucuuagcuu
...(((((((.....((((((((((((((((((.((((............)))))))))))))))))))))).....)))))))..........

Structure
-------aca       cuggc                  A    gucua 
          ggcugcc     UCAGUUAUCACAGUGCUG UGCU     u
          |||||||     |||||||||||||||||| ||||      
          ccgacgg     AGUCAAUAGUGUCAUGAC AUgg     u
uucgauucua       uagGA                  -    aaauc 


Annotation confidence Not enough data
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Genome context
AKHW03002907.1: 12121204-12121297 [+]

Database links

Mature ami-miR-101-5p

Accession MIMAT0038116
Description Alligator mississippiensis ami-miR-101-5p mature miRNA
Sequence 16 - UCAGUUAUCACAGUGCUGAUGCU - 38
Evidence experimental
Illumina [1]

Mature ami-miR-101-3p

Accession MIMAT0038117
Description Alligator mississippiensis ami-miR-101-3p mature miRNA
Sequence 53 - UACAGUACUGUGAUAACUGAAG - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196