miRBase entry: ami-mir-101-2

Stem-loop ami-mir-101-2


Accession
MI0029712
Description
Alligator mississippiensis ami-mir-101-2 precursor miRNA


Sequence

caugaacuguccuuuuUCGGUUAUCAUGGUACCGGUGCUguauacgugaaaggUACAGUACUGUGAUAACUGAAGaaugauggugccaucaca
.(((.((((((.((((((((((((((((((((..(((((............))))).)))))))))))))))))))).))))))..)))....

Structure
---c   -a      c                    CG     guaua 
    aug  acuguc uuuuUCGGUUAUCAUGGUAC  GUGCU     c
    |||  |||||| ||||||||||||||||||||  |||||      
    uac  ugguag aaGAAGUCAAUAGUGUCAUG  CAUgg     g
acac   cg      u                    -A     aaagu 


Annotation confidence Not enough data
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Genome context
AKHW03006358.1: 32263695-32263787 [+]

Database links

Mature ami-miR-101-3p

Accession MIMAT0038117
Description Alligator mississippiensis ami-miR-101-3p mature miRNA
Sequence 54 - UACAGUACUGUGAUAACUGAAG - 75
Evidence experimental
Illumina [1]

Mature ami-miR-101-2-5p

Accession MIMAT0038118
Description Alligator mississippiensis ami-miR-101-2-5p mature miRNA
Sequence 17 - UCGGUUAUCAUGGUACCGGUGCU - 39
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196