miRBase entry: ami-mir-106

Stem-loop ami-mir-106


Accession
MI0029714
Description
Alligator mississippiensis ami-mir-106 precursor miRNA


Sequence

aucccagggcUAAAGUGCUUGCAGUGCAGGUagcuggcgcuggcgcuacugcagugugggggcuugcagcucugggga
..(((((((((.((((.((((((.(((((.((((..((....))))))))))).)))))).))))..)))))))))..

Structure
au         -A    G      G     G    ug  g 
  cccagggcU  AAGU CUUGCA UGCAG Uagc  gc c
  |||||||||  |||| |||||| ||||| ||||  ||  
  gggucucga  uucg gggugu acguc aucg  cg u
ag         cg    g      g     -    --  g 


Annotation confidence Not enough data
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Genome context
AKHW03000196.1: 16536-16613 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ami-mir-106
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-miR-106-5p

Accession MIMAT0038120
Description Alligator mississippiensis ami-miR-106-5p mature miRNA
Sequence 11 - UAAAGUGCUUGCAGUGCAGGU - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196