miRBase entry: ami-mir-124-1

Stem-loop ami-mir-124-1


Accession
MI0029717
Description
Alligator mississippiensis ami-mir-124-1 precursor miRNA


Sequence

ggccccgcggccccucucugCGUGUUCACAGCGGACCUUGAUuuaaauguccauacaauUAAGGCACGCGGUGAAUGCCAagaacggggccgccucgc
.((...((((((((..(((..((((((((.(((..((((((((.............))))))))..))).))))))))..)))..))))))))...))

Structure
g  ccc        uc   gC        A   GA        uaaau 
 gc   gcggcccc  ucu  GUGUUCAC GCG  CCUUGAUu     g
 ||   ||||||||  |||  |||||||| |||  ||||||||     u
 cg   cgccgggg  aga  CGUAAGUG CGC  GGAAUuaa     c
-  cuc        ca   AC        G   AC        cauac 


Annotation confidence Not enough data
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Genome context
AKHW03001328.1: 1926491-1926588 [-]

Database links

Mature ami-miR-124-5p

Accession MIMAT0038125
Description Alligator mississippiensis ami-miR-124-5p mature miRNA
Sequence 21 - CGUGUUCACAGCGGACCUUGAU - 42
Evidence experimental
Illumina [1]

Mature ami-miR-124-3p

Accession MIMAT0038126
Description Alligator mississippiensis ami-miR-124-3p mature miRNA
Sequence 60 - UAAGGCACGCGGUGAAUGCCA - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196