miRBase entry: ami-mir-125b-1

Stem-loop ami-mir-125b-1


Accession
MI0029722
Description
Alligator mississippiensis ami-mir-125b-1 precursor miRNA


Sequence

uuugugcgccccucucaaUCCCUGAGACCCUAACUUGUGAuguuuagcuuuuaaauccACGGGUUAGGCUCUUGGGAGCUgugaguugugcuuuggc
.....((((..(((.((.((((.((((.(((((((((((..(((((.....))))).))))))))))).))))))))..)).)))..))))......

Structure
-uuugu    cc   u  -a    U    C           Au     g 
      gcgc  cuc ca  UCCC GAGA CCUAACUUGUG  guuua c
      ||||  ||| ||  |||| |||| |||||||||||  ||||| u
      cgug  gag gU  AGGG UUCU GGAUUGGGCAc  uaaau u
cgguuu    uu   u  CG    -    C           -c     u 


Annotation confidence Not enough data
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Genome context
AKHW03002395.1: 3961390-3961486 [+]

Database links

Mature ami-miR-125b-5p

Accession MIMAT0038128
Description Alligator mississippiensis ami-miR-125b-5p mature miRNA
Sequence 19 - UCCCUGAGACCCUAACUUGUGA - 40
Evidence experimental
Illumina [1]

Mature ami-miR-125b-3p

Accession MIMAT0038129
Description Alligator mississippiensis ami-miR-125b-3p mature miRNA
Sequence 59 - ACGGGUUAGGCUCUUGGGAGCU - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196