miRBase entry: ami-mir-130a

Stem-loop ami-mir-130a


Accession
MI0029729
Description
Alligator mississippiensis ami-mir-130a precursor miRNA


Sequence

caggccccuguccaaggcucuuuucacauuguacuacuguaugagccccugccaagCAAUGCAAUGUAAAAAGGGCAUuggguaggugguccc
..(((((((((((((.((((((((.((((((((....(((.((.((....)))).))).)))))))).)))))))).))))))))).))))..

Structure
ca    -         g        c        cuac   a  a  c 
  ggcc ccuguccaa gcucuuuu acauugua    ugu ug gc c
  |||| ||||||||| |||||||| ||||||||    ||| || ||  
  cugg ggauggguU CGGGAAAA UGUAACGU    ACg ac cg c
cc    u         A        A        ---A   a  -  u 


Annotation confidence Not enough data
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Genome context
AKHW03001868.1: 610391-610483 [+]

Database links

Mature ami-miR-130a-3p

Accession MIMAT0038140
Description Alligator mississippiensis ami-miR-130a-3p mature miRNA
Sequence 57 - CAAUGCAAUGUAAAAAGGGCAU - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196