miRBase entry: ami-mir-132

Stem-loop ami-mir-132


Accession
MI0029732
Description
Alligator mississippiensis ami-mir-132 precursor miRNA


Sequence

acgucgccagggcaACCGUGGCUUUAGAUUGUUACuguguggugcgugggUAACAGUCUACAGCCAUGGUCGcugggccggacgc
.(((((((..(((.(((((((((.((((((((((((.(((...)))..)))))))))))).))))))))).))).)))..)))).

Structure
a    --   ag   a         U            -g   g 
 cguc  gcc  ggc ACCGUGGCU UAGAUUGUUACu  ugu  
 ||||  |||  ||| ||||||||| ||||||||||||  ||| g
 gcag  cgg  ucG UGGUACCGA AUCUGACAAUgg  gcg  
c    gc   -g   C         C            gu   u 


Annotation confidence Not enough data
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Genome context
AKHW03002312.1: 276-360 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ami-mir-132
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-miR-132-5p

Accession MIMAT0038144
Description Alligator mississippiensis ami-miR-132-5p mature miRNA
Sequence 15 - ACCGUGGCUUUAGAUUGUUAC - 35
Evidence experimental
Illumina [1]

Mature ami-miR-132-3p

Accession MIMAT0038145
Description Alligator mississippiensis ami-miR-132-3p mature miRNA
Sequence 51 - UAACAGUCUACAGCCAUGGUCG - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196