miRBase entry: ami-mir-133b

Stem-loop ami-mir-133b

Accession

MI0029736

Description

Alligator mississippiensis ami-mir-133b precursor miRNA

Sequence

agcugcacucugcuguggcuggucaaacggaaccaaguccgucuuccuuggaggUUUGGUCCCCUUCAACCAGCUAuagcagugcuga
....(((((..((((((((((((..((.((.((((((.((.((......)).)))))))).)).))..)))))))))))))))))...

Structure

agcu     cu            ca  c  a      u  g  uu 
    gcacu  gcuguggcuggu  aa gg accaag cc uc  c
    |||||  ||||||||||||  || || |||||| || ||   
    cguga  cgauAUCGACCA  UU CC UGGUUU gg gg  c
-agu     --            AC  C  C      -  a  uu

Annotation confidence Not enough data

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Genome context

AKHW03003504.1: 2019326-2019413 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ami-mir-133b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ami-miR-133b-3p

Accession	MIMAT0038148
Description	Alligator mississippiensis ami-miR-133b-3p mature miRNA
Sequence	55 - UUUGGUCCCCUUCAACCAGCUA - 76
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196