miRBase entry: ami-mir-135-2

Stem-loop ami-mir-135-2


Accession
MI0029738
Description
Alligator mississippiensis ami-mir-135-2 precursor miRNA


Sequence

uaaauucacucuaguguuuUAUGGCUUUUUAUUCCUAUGUGauaguaauaaagucucAUGUAGGGAUGGAAGCCAUGAAauacauugugaaaaa
....(((((....((((((((((((((((.((((((((((((.(.(.....).).))))))))))))))))))))))))))))...)))))...

Structure
uaaa     ucua                U            u g a 
    uucac    guguuuUAUGGCUUUU AUUCCUAUGUGa a u a
    |||||    |||||||||||||||| |||||||||||| | | u
    aagug    cauaAAGUACCGAAGG UAGGGAUGUAcu u a a
-aaa     -uua                -            c g a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
AKHW03007000.1: 12728170-12728263 [-]

Database links

Mature ami-miR-135-5p

Accession MIMAT0038149
Description Alligator mississippiensis ami-miR-135-5p mature miRNA
Sequence 20 - UAUGGCUUUUUAUUCCUAUGUG - 41
Evidence experimental
Illumina [1]

Mature ami-miR-135-2-3p

Accession MIMAT0038151
Description Alligator mississippiensis ami-miR-135-2-3p mature miRNA
Sequence 58 - AUGUAGGGAUGGAAGCCAUGAA - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196