miRBase entry: ami-mir-139

Stem-loop ami-mir-139


Accession
MI0029744
Description
Alligator mississippiensis ami-mir-139 precursor miRNA


Sequence

aggccuggcuguauUCUACAGUGCAUGUGUCUCCAguguuucuaagcgacUGGAGAUACAGCCCUGUCGGAauaacagccagcgccaa
.((((((((((((((((((((.((.(((((((((((((((....))).)))))))))))))).)))).))))).)))))))).)))..

Structure
-a   -        -     -    U  A            -   u 
  ggc cuggcugu auUCU ACAG GC UGUGUCUCCAgu guu c
  ||| |||||||| ||||| |||| || |||||||||||| |||  
  ccg gaccgaca uaAGG UGUC CG ACAUAGAGGUca cga u
aa   c        a     C    C  -            g   a 


Annotation confidence Not enough data
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Genome context
AKHW03005702.1: 33801-33888 [+]

Database links

Mature ami-miR-139-5p

Accession MIMAT0038158
Description Alligator mississippiensis ami-miR-139-5p mature miRNA
Sequence 15 - UCUACAGUGCAUGUGUCUCCA - 35
Evidence experimental
Illumina [1]

Mature ami-miR-139-3p

Accession MIMAT0038159
Description Alligator mississippiensis ami-miR-139-3p mature miRNA
Sequence 51 - UGGAGAUACAGCCCUGUCGGA - 71
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196