miRBase entry: ami-mir-181b-1

Stem-loop ami-mir-181b-1


Accession
MI0029764
Description
Alligator mississippiensis ami-mir-181b-1 precursor miRNA


Sequence

aaggucacaaucAACAUUCAUUGCUGUCGGUGGGUUuaacuaugcggacaagCUCACUGAACAAUGAAUGCAAcuguggccccacu
..(((((((.....(((((((((...(((((((((((..((....))..))))))))))).)))))))))....))))))).....

Structure
---aa       aucAA         CUG           aa  a 
     ggucaca     CAUUCAUUG   UCGGUGGGUUu  cu u
     |||||||     |||||||||   |||||||||||  ||  
     ccggugu     GUAAGUAAC   AGUCACUCgaa  gg g
ucacc       -cAAC         --A           ca  c 


Annotation confidence Not enough data
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Genome context
AKHW03003392.1: 1538979-1539064 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ami-mir-181b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-miR-181b-5p

Accession MIMAT0038190
Description Alligator mississippiensis ami-miR-181b-5p mature miRNA
Sequence 13 - AACAUUCAUUGCUGUCGGUGGGUU - 36
Evidence experimental
Illumina [1]

Mature ami-miR-181b-3p

Accession MIMAT0038191
Description Alligator mississippiensis ami-miR-181b-3p mature miRNA
Sequence 53 - CUCACUGAACAAUGAAUGCAA - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196