miRBase entry: ami-mir-183

Stem-loop ami-mir-183


Accession
MI0029768
Description
Alligator mississippiensis ami-mir-183 precursor miRNA


Sequence

acuccuguucugugUAUGGCACUGGUAGAAUUCACUgugaaaacacgcuaucagUGAAUUACCAUAGGGCCAUAaacagagcagagaa
..(((((((((((.((((((..(((((..((((((((..(........)..)))))))))))))....)))))).))))))))).)).

Structure
ac  -         g      --AC     GA        ug aaa 
  uc cuguucugu UAUGGC    UGGUA  AUUCACUg  a   c
  || ||||||||| ||||||    |||||  ||||||||  |    
  ag gacgagaca AUACCG    ACCAU  UAAGUgac  u   a
-a  a         a      GGAU     --        ua cgc 


Annotation confidence Not enough data
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Genome context
AKHW03002440.1: 28193869-28193956 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ami-mir-183
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-miR-183-5p

Accession MIMAT0038196
Description Alligator mississippiensis ami-miR-183-5p mature miRNA
Sequence 15 - UAUGGCACUGGUAGAAUUCACU - 36
Evidence experimental
Illumina [1]

Mature ami-miR-183-3p

Accession MIMAT0038197
Description Alligator mississippiensis ami-miR-183-3p mature miRNA
Sequence 55 - UGAAUUACCAUAGGGCCAUA - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196