Stem-loop ami-mir-192

Accession

MI0029774

Description

Alligator mississippiensis ami-mir-192 precursor miRNA

Sequence

ugcgugcauggggcuaUGACCUAUGGAUUGACAGCCAGuaucggagccucgcccUGGCUGUCUGUUCUAUAGGGCAUAggacugggcgcac
(((((.((.(...(((((.((((((((..(((((((((...(((....)))..)))))))))...)))))))).)))))..))).))))).

Structure

-     g  u ggg     A        -UU         uau   a 
 ugcgu ca g   cuaUG CCUAUGGA   GACAGCCAG   cgg g
 ||||| || |   ||||| ||||||||   |||||||||   |||  
 acgcg gu c   gAUAC GGAUAUCU   CUGUCGGUc   gcu c
c     g  - -ag     G        UGU         -cc   c 

Annotation confidence Not enough data

Genome context

AKHW03006887.1: 23368-23458 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ami-mir-192

Mature ami-miR-192-5p

• Accession: MIMAT0038206
• Description: Alligator mississippiensis ami-miR-192-5p mature miRNA
• Sequence: 17 - UGACCUAUGGAUUGACAGCCAG - 38
• Evidence: experimental ; Illumina [1]

Mature ami-miR-192-3p

• Accession: MIMAT0038207
• Description: Alligator mississippiensis ami-miR-192-3p mature miRNA
• Sequence: 55 - UGGCUGUCUGUUCUAUAGGGCAUA - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196