miRBase entry: ami-mir-193a

Stem-loop ami-mir-193a


Accession
MI0029775
Description
Alligator mississippiensis ami-mir-193a precursor miRNA


Sequence

caugcgagcugagggcUGGGUCUUUGCGGGCGAGGUGagagguucgugcguucAACUGGCCUACAAAGUCCCAguucucggcucccagc
..((.(((((((((((((((.(((((.((((.((.((((.(.......).)))).)).)))).))))).))))))))))))))).))..

Structure
ca  c               U     C    G  G    a gu 
  ug gagcugagggcUGGG CUUUG GGGC AG UGag g  u
  || ||||||||||||||| ||||| |||| || |||| |  c
  ac cucggcucuugACCC GAAAC UCCG UC Acuu c  g
cg  c               U     A    G  A    g gu 


Annotation confidence Not enough data
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Genome context
AKHW03004113.1: 5177003-5177091 [-]

Database links

Mature ami-miR-193a-5p

Accession MIMAT0038208
Description Alligator mississippiensis ami-miR-193a-5p mature miRNA
Sequence 17 - UGGGUCUUUGCGGGCGAGGUG - 37
Evidence experimental
Illumina [1]

Mature ami-miR-193a-3p

Accession MIMAT0038209
Description Alligator mississippiensis ami-miR-193a-3p mature miRNA
Sequence 54 - AACUGGCCUACAAAGUCCCA - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196