miRBase entry: ami-mir-196-1

Stem-loop ami-mir-196-1


Accession
MI0029779
Description
Alligator mississippiensis ami-mir-196-1 precursor miRNA


Sequence

gaacugcuuugugaauUAGGUAGUUUCAUGUUGUUGGgcuuuuauuuuuaaacacaagaacauaaaacuaccugauuuacuccaguuauucucc
.(((((....((((((((((((((((.(((((.(((....((((....))))..))).))))).))))))))))))))))..))))).......

Structure
------g     cuuu                C     G   Ggcu    u 
       aacug    gugaauUAGGUAGUUU AUGUU UUG    uuua u
       |||||    |||||||||||||||| ||||| |||    ||||  
       uugac    cauuuaguccaucaaa uacaa aac    aaau u
ccucuua     --cu                a     g   --ac    u 


Annotation confidence Not enough data
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Genome context
AKHW03000817.1: 3471021-3471114 [-]

Database links

Mature ami-miR-196-5p

Accession MIMAT0038215
Description Alligator mississippiensis ami-miR-196-5p mature miRNA
Sequence 17 - UAGGUAGUUUCAUGUUGUUGG - 37
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196