miRBase entry: ami-mir-196-3

Stem-loop ami-mir-196-3


Accession
MI0029781
Description
Alligator mississippiensis ami-mir-196-3 precursor miRNA


Sequence

cgagaacugcugugugguuUAGGUAGUUUCAUGUUGUUGGggcuccaccuuucucucuacagcacgaaacugccuuaauuacuucaguugaaaucgu
(((.....((((.((((((.((((((((((.((((((.((((...........)))).)))))).)))))))))).))))))..)))).....))).

Structure
-   gaacu    -u      U          A      U    cucc 
 cga     gcug  gugguu AGGUAGUUUC UGUUGU GGgg    a
 |||     ||||  |||||| |||||||||| |||||| ||||    c
 gcu     ugac  cauuaa uccgucaaag acgaca cucu    c
u   aaagu    uu      u          c      u    cuuu 


Annotation confidence Not enough data
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Genome context
AKHW03005461.1: 24902794-24902890 [-]

Database links

Mature ami-miR-196-5p

Accession MIMAT0038215
Description Alligator mississippiensis ami-miR-196-5p mature miRNA
Sequence 20 - UAGGUAGUUUCAUGUUGUUGG - 40
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196