miRBase entry: ami-mir-199-3

Stem-loop ami-mir-199-3


Accession
MI0029784
Description
Alligator mississippiensis ami-mir-199-3 precursor miRNA


Sequence

uccacuccgucugCCCAGUGUUCAGACUACCUGUUcaggacuacgagauuguACAGUAGUCUGCACAUUGGUUAggcugugcuggg
.((((.(.(((((.(((((((.((((((((.(((.(((..........))).))))))))))).))))))).))))).).).))).

Structure
u   - u c     C       U        C   U   gacu 
 cca c c gucug CCAGUGU CAGACUAC UGU cag    a
 ||| | | ||||| ||||||| |||||||| ||| |||     
 ggu g g cggAU GGUUACA GUCUGAUG ACA guu    c
g   c u u     U       C        -   u   agag 


Annotation confidence Not enough data
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Genome context
AKHW03006215.1: 13712816-13712901 [+]

Database links

Mature ami-miR-199-5p

Accession MIMAT0038216
Description Alligator mississippiensis ami-miR-199-5p mature miRNA
Sequence 14 - CCCAGUGUUCAGACUACCUGUU - 35
Evidence experimental
Illumina [1]

Mature ami-miR-199-3p

Accession MIMAT0038217
Description Alligator mississippiensis ami-miR-199-3p mature miRNA
Sequence 53 - ACAGUAGUCUGCACAUUGGUUA - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196