miRBase entry: ami-mir-215

Stem-loop ami-mir-215

Accession

MI0029798

Description

Alligator mississippiensis ami-mir-215 precursor miRNA

Sequence

aacuguugugcaggaaaAUGACCUAUGAAUUGACAGACuguguauucuaagcuugUCUGUCAUUUCUGUAGGCCAAUauucugcacaccuuc
......(((((((((...((.((((((((.((((((((.((.........))..)))))))).))).))))).))...))))))))).....

Structure

aacugu         aaA  A     -   U        -u  gua 
      ugugcagga   UG CCUAU GAA UGACAGAC  gu   u
      |||||||||   || ||||| ||| ||||||||  ||   u
      acacgucuu   AC GGAUG CUU ACUGUCUg  cg   c
-cuucc         aUA  C     U   U        uu  aau

Annotation confidence Not enough data

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Genome context

AKHW03001146.1: 13838061-13838152 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ami-mir-215

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ami-miR-215-5p

Accession	MIMAT0038240
Description	Alligator mississippiensis ami-miR-215-5p mature miRNA
Sequence	18 - AUGACCUAUGAAUUGACAGAC - 38
Evidence	experimental Illumina [1]

Mature ami-miR-215-3p

Accession	MIMAT0038241
Description	Alligator mississippiensis ami-miR-215-3p mature miRNA
Sequence	56 - UCUGUCAUUUCUGUAGGCCAAU - 77
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196