miRBase entry: ami-mir-216a

Stem-loop ami-mir-216a

Accession

MI0029799

Description

Alligator mississippiensis ami-mir-216a precursor miRNA

Sequence

gauggcugugaauuggcaUAAUCUCAGCUGGCAACUGUGagcaguucauaaauucucucacaguuguaucugggauuaugcuaaacauagcaauuucu
....((((((..(((((((((((((((...(((((((((((.((..........)))))))))))))..))))))))))))))).)))))).......

Structure

---gaug      aa               CUG           c  uuca 
       gcugug  uuggcaUAAUCUCAG   GCAACUGUGag ag    u
       ||||||  |||||||||||||||   ||||||||||| ||     
       cgauac  aaucguauuaggguc   uguugacacuc uc    a
ucuuuaa      -a               -ua           -  uuaa

Annotation confidence Not enough data

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Genome context

AKHW03006178.1: 3395034-3395131 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ami-mir-216a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ami-miR-216a-5p

Accession	MIMAT0038242
Description	Alligator mississippiensis ami-miR-216a-5p mature miRNA
Sequence	19 - UAAUCUCAGCUGGCAACUGUG - 39
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196