miRBase entry: ami-mir-218-1

Stem-loop ami-mir-218-1


Accession
MI0029802
Description
Alligator mississippiensis ami-mir-218-1 precursor miRNA


Sequence

uagcgagauuuucugUUGUGCUUGAUCUAACCAUGUgguugugagguaugaguaaaacaugguucugucaagcaccauggaacgucacgcagcu
..(((.(((.((((((.(((((((((..((((((((.....(.(....).).....))))))))..))))))))).)))))).))).)))....

Structure
--ua   a   u      U         CU        gguug g g 
    gcg gau uucugU GUGCUUGAU  AACCAUGU     u a g
    ||| ||| |||||| |||||||||  ||||||||     | |  
    cgc cug aaggua cacgaacug  uugguaca     a u u
ucga   a   c      c         uc        aaaug g a 


Annotation confidence Not enough data
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Genome context
AKHW03000533.1: 21902003-21902096 [+]

Database links

Mature ami-miR-218-5p

Accession MIMAT0038247
Description Alligator mississippiensis ami-miR-218-5p mature miRNA
Sequence 16 - UUGUGCUUGAUCUAACCAUGU - 36
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196