miRBase entry: ami-mir-219a

Stem-loop ami-mir-219a


Accession
MI0029804
Description
Alligator mississippiensis ami-mir-219a precursor miRNA


Sequence

ugagcgccggguccUGAUUGUCCAAACGCAAUUCUUGugucugccccaAGAAUUGAGUGUGGACGUCGGGagccgccguucccca
.(((((.(((.(((((((.(((((.((.(((((((((.(......)))))))))).)).)))))))))))).))).)))))....

Structure
---u     c   g       U     A  G         u uc 
    gagcg cgg uccUGAU GUCCA AC CAAUUCUUG g  u
    ||||| ||| ||||||| ||||| || ||||||||| |   
    cuugc gcc aGGGCUG CAGGU UG GUUAAGAac c  g
accc     c   g       -     G  A         - cc 


Annotation confidence Not enough data
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Genome context
AKHW03003855.1: 103721-103805 [-]

Database links

Mature ami-miR-219a-5p

Accession MIMAT0038248
Description Alligator mississippiensis ami-miR-219a-5p mature miRNA
Sequence 15 - UGAUUGUCCAAACGCAAUUCUUG - 37
Evidence experimental
Illumina [1]

Mature ami-miR-219a-3p

Accession MIMAT0038249
Description Alligator mississippiensis ami-miR-219a-3p mature miRNA
Sequence 49 - AGAAUUGAGUGUGGACGUCGGG - 70
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196