miRBase entry: ami-mir-302d

Stem-loop ami-mir-302d

Accession

MI0029815

Description

Alligator mississippiensis ami-mir-302d precursor miRNA

Sequence

ccccucuacuuuaacaugggagguacuugcuggaugcuugaaaaagUAAGUGCUUCCAUGUUUUAGUUguggugaauccu
..((.(.(((..(((((((.(((((((((((.............))))))))))))))))))..))).).))........

Structure

------cc  u u   uu       g           ggaug 
        cc c acu  aacaugg agguacuugcu     c
        || | |||  ||||||| |||||||||||     u
        gg g UGA  UUGUACC UUCGUGAAUga     u
uccuaagu  u U   UU       -           aaaag

Annotation confidence Not enough data

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Genome context

AKHW03006071.1: 214390-214469 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from ami-mir-302d

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ami-miR-302d-3p

Accession	MIMAT0038267
Description	Alligator mississippiensis ami-miR-302d-3p mature miRNA
Sequence	47 - UAAGUGCUUCCAUGUUUUAGUU - 68
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196