miRBase entry: ami-mir-338-1

Stem-loop ami-mir-338-1


Accession
MI0029816
Description
Alligator mississippiensis ami-mir-338-1 precursor miRNA


Sequence

ccacuugcucccgccuccccAACAAUAUCCUGGUGCUGAGCGaguugcgcacagagacUCCAGCAUCAGUGAUUUUGUUGaggagggcgagcucugcc
......((((.(.(((((.((((((.((((((((((((...(((((.(.....).)))))))))))))).))).)))))).)))))).))))......

Structure
ccacuu    c g     c      U   -         AGC     g g 
      gcuc c ccucc cAACAA AUC CUGGUGCUG   Gaguu c c
      |||| | ||||| |||||| ||| |||||||||   ||||| | a
      cgag g ggagg GUUGUU UAG GACUACGAC   CUcag g c
ccgucu    c -     a      U   U         ---     a a 


Annotation confidence Not enough data
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Genome context
AKHW03001221.1: 14501-14598 [-]

Database links

Mature ami-miR-338-5p

Accession MIMAT0038268
Description Alligator mississippiensis ami-miR-338-5p mature miRNA
Sequence 21 - AACAAUAUCCUGGUGCUGAGCG - 42
Evidence experimental
Illumina [1]

Mature ami-miR-338-3p

Accession MIMAT0038269
Description Alligator mississippiensis ami-miR-338-3p mature miRNA
Sequence 59 - UCCAGCAUCAGUGAUUUUGUUG - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196