Stem-loop ami-mir-449a

Accession

MI0029825

Description

Alligator mississippiensis ami-mir-449a precursor miRNA

Sequence

gugugugaugggaAGGCAGUGUACUGUUAGCUGGUgucaguuuuuucaaccagcuaacaugcagcugcuauccuacugcacaaacuuuga
.((((((.(((((.(((((((((.(((((((((((.............))))))))))))))).))))).))))).))))))........

Structure

-------g      a     A     -    C           gucag 
        ugugug uggga GGCAG UGUA UGUUAGCUGGU     u
        |||||| ||||| ||||| |||| |||||||||||     u
        acacgu auccu ucguc acgu acaaucgacca     u
aguuucaa      c     a     g    -           acuuu 

Annotation confidence Not enough data

Genome context

AKHW03004724.1: 29165327-29165416 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from ami-mir-449a

Mature ami-miR-449a-5p

• Accession: MIMAT0038281
• Description: Alligator mississippiensis ami-miR-449a-5p mature miRNA
• Sequence: 14 - AGGCAGUGUACUGUUAGCUGGU - 35
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196