miRBase entry: ami-mir-454

Stem-loop ami-mir-454

Accession

MI0029829

Description

Alligator mississippiensis ami-mir-454 precursor miRNA

Sequence

aaccuuaaggauaagACCCUAUCAAUAUUGCCUCUGCUuuugugaucaggguagUAGUGCAAUAUUGCUUAUAGGGUCUuuucuuuggagggu
..(((((((((.((((((((((((((((((((((((((((.(....)))))))).)).)))))))))...)))))))))).))))).))))..

Structure

aa    -     u          ---         -  -       u u 
  ccuu aagga aagACCCUAU   CAAUAUUGC CU CUGCUuu g g
  |||| ||||| ||||||||||   ||||||||| || ||||||| |  
  ggag uuucu uUCUGGGAUA   GUUAUAACG GA gauggga c a
ug    g     u          UUC         U  U       - u

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

AKHW03002185.1: 17721-17813 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ami-mir-454

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ami-miR-454-5p

Accession	MIMAT0038285
Description	Alligator mississippiensis ami-miR-454-5p mature miRNA
Sequence	16 - ACCCUAUCAAUAUUGCCUCUGCU - 38
Evidence	experimental Illumina [1]

Mature ami-miR-454-3p

Accession	MIMAT0038286
Description	Alligator mississippiensis ami-miR-454-3p mature miRNA
Sequence	55 - UAGUGCAAUAUUGCUUAUAGGGUCU - 79
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196