Stem-loop ami-mir-599

Accession

MI0029842

Description

Alligator mississippiensis ami-mir-599 precursor miRNA

Sequence

cauauuguccauaguguGUUUGAUAAGCUGACAUGGGACaggaguucuuuucacuGUUGUGUCAGUUUAUCAAACCCauaccuggacaucaguc
.....((((((..(((.(((((((((((((((((..((((((((.....))).)))))))))))))))))))))).)))...))))))......

Structure

-cauau      -ua   u                 GG     -   u 
      ugucca   gug GUUUGAUAAGCUGACAU  GACag gag u
      ||||||   ||| |||||||||||||||||  ||||| ||| c
      acaggu   uaC CAAACUAUUUGACUGUG  UUGuc cuu u
cugacu      cca   C                 --     a   u 

Annotation confidence Not enough data

Genome context

AKHW03004704.1: 18806739-18806832 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ami-mir-599

Mature ami-miR-599-5p

• Accession: MIMAT0038305
• Description: Alligator mississippiensis ami-miR-599-5p mature miRNA
• Sequence: 18 - GUUUGAUAAGCUGACAUGGGAC - 39
• Evidence: experimental ; Illumina [1]

Mature ami-miR-599-3p

• Accession: MIMAT0038306
• Description: Alligator mississippiensis ami-miR-599-3p mature miRNA
• Sequence: 56 - GUUGUGUCAGUUUAUCAAACCC - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196