miRBase entry: ami-mir-1306

Stem-loop ami-mir-1306

Accession

MI0029845

Description

Alligator mississippiensis ami-mir-1306 precursor miRNA

Sequence

augaacagccuccacCACCUCCCCUGCAAACGUCCAgugacgcagagguaaUGGACGUUGGCUCUGGUGGUGAUggacagucagauac
.(((....((..(((((((......((.((((((((...((......))..)))))))).))...)))))))..))....))).....

Structure

----a   acag  uc       UCCCCU  A        gug  gc 
     uga    cc  cacCACC      GC AACGUCCA   ac  a
     |||    ||  |||||||      || ||||||||   ||   
     acu    gg  GUGGUGG      CG UUGCAGGU   ug  g
cauag   gaca  UA       ---UCU  G        -aa  ga

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

AKHW03002185.1: 1828163-1828250 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ami-mir-1306

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ami-miR-1306-5p

Accession	MIMAT0038309
Description	Alligator mississippiensis ami-miR-1306-5p mature miRNA
Sequence	16 - CACCUCCCCUGCAAACGUCCA - 36
Evidence	experimental Illumina [1]

Mature ami-miR-1306-3p

Accession	MIMAT0038310
Description	Alligator mississippiensis ami-miR-1306-3p mature miRNA
Sequence	52 - UGGACGUUGGCUCUGGUGGUGAU - 74
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196