miRBase entry: ami-mir-1388

Stem-loop ami-mir-1388


Accession
MI0029847
Description
Alligator mississippiensis ami-mir-1388 precursor miRNA


Sequence

agugaggggcguccccAGGACUGUCUAACCUGAGAAUGgugaaacacgagggucaAUCUCAGGUUCGUCAGCCCAUgagacgcucucuccag
.(.((((((((((.(..((.(((.(.(((((((((....(((..(....)..))).))))))))).).))).))..).))))).))))))..

Structure
-a u     -     c cA  A   U U         AUGg   aa a 
  g gaggg gcguc c  GG CUG C AACCUGAGA    uga  c c
  | ||||| ||||| |  || ||| | |||||||||    |||  |  
  c cucuc cgcag g  CC GAC G UUGGACUCU    acu  g g
ga -     u     a UA  C   U C         ---A   gg a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
AKHW03004329.1: 954498-954589 [+]

Database links

Mature ami-miR-1388-5p

Accession MIMAT0038312
Description Alligator mississippiensis ami-miR-1388-5p mature miRNA
Sequence 17 - AGGACUGUCUAACCUGAGAAUG - 38
Evidence experimental
Illumina [1]

Mature ami-miR-1388-3p

Accession MIMAT0038313
Description Alligator mississippiensis ami-miR-1388-3p mature miRNA
Sequence 56 - AUCUCAGGUUCGUCAGCCCAU - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196