Stem-loop ami-mir-2184

Accession

MI0029859

Description

Alligator mississippiensis ami-mir-2184 precursor miRNA

Sequence

cccggucccggccgcccccAACAGUAAGAGUUUAUGUGCGGugagagcuggaaucuGCAUGUGAACUCCUACUGCUCCgggcggcggggcacagcggc
.((((((((.(((((((....(((((.((((((((((((((.............)))))))))))))).)))))....))))))).))).))..))).

Structure

c   --  -   g       ccAA     A              ugaga 
 ccg  gu ccc gccgccc    CAGUA GAGUUUAUGUGCGG     g
 |||  || ||| |||||||    ||||| ||||||||||||||     c
 ggc  ca ggg cggcggg    GUCAU CUCAAGUGUACGuc     u
c   ga  c   g       CCUC     C              uaagg 

Annotation confidence Not enough data

Genome context

AKHW03002312.1: 547-644 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ami-mir-2184

Mature ami-miR-2184-5p

• Accession: MIMAT0038331
• Description: Alligator mississippiensis ami-miR-2184-5p mature miRNA
• Sequence: 20 - AACAGUAAGAGUUUAUGUGCGG - 41
• Evidence: experimental ; Illumina [1]

Mature ami-miR-2184-3p

• Accession: MIMAT0038332
• Description: Alligator mississippiensis ami-miR-2184-3p mature miRNA
• Sequence: 57 - GCAUGUGAACUCCUACUGCUCC - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196