Stem-loop ami-mir-9609

Accession

MI0029876

Description

Alligator mississippiensis ami-mir-9609 precursor miRNA

Sequence

cuguguugccuguGAGUCCAUGCUCAGCUCUCAUGuuucuccagcaCAGGGGCUGCUCCAUGGAAGCAaaggcucu
.......((((.((..((((((..(((((((..((((.....))))..)))))))...))))))..)).))))...

Structure

cuguguu    g  AG      -CU       CA    u 
       gccu uG  UCCAUG   CAGCUCU  UGuu c
       |||| ||  ||||||   |||||||  |||| u
       cgga AC  AGGUAC   GUCGGGG  acga c
----ucu    a  GA      CUC       AC    c 

Annotation confidence Not enough data

Genome context

AKHW03002077.1: 1358377-1358452 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ami-mir-9609

Mature ami-miR-9609-5p

• Accession: MIMAT0038362
• Description: Alligator mississippiensis ami-miR-9609-5p mature miRNA
• Sequence: 14 - GAGUCCAUGCUCAGCUCUCAUG - 35
• Evidence: experimental ; Illumina [1]

Mature ami-miR-9609-3p

• Accession: MIMAT0038363
• Description: Alligator mississippiensis ami-miR-9609-3p mature miRNA
• Sequence: 47 - CAGGGGCUGCUCCAUGGAAGCA - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196