miRBase entry: cli-mir-7a-2

Stem-loop cli-mir-7a-2

Accession

MI0029897

Description

Columba livia cli-mir-7a-2 precursor miRNA

Sequence

ggugcccagcucccucUGGAAGACUAGUGAUUUUGUUGUUguauggcucaucccaccaCAACAAGUCACAGUCUGCCCUAgggugcguggccuc
((.(((..((.((((..((.(((((.(((((((.(((((.((..((......)))).))))))))))))))))).))..)))).))..))))).

Structure

-  u   ca  u    cU  A     A       U     U  au  cu 
 gg gcc  gc cccu  GG AGACU GUGAUUU GUUGU gu  gg  c
 || |||  || ||||  || ||||| ||||||| ||||| ||  ||   
 uc cgg  cg gggA  CC UCUGA CACUGAA CAACa ca  cc  a
c  -   ug  u    UC  G     -       -     c  --  cu

Annotation confidence Not enough data

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Genome context

KB375424.1: 999171-999264 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-mir-7a-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-7a-5p

Accession	MIMAT0038396
Description	Columba livia cli-miR-7a-5p mature miRNA
Sequence	17 - UGGAAGACUAGUGAUUUUGUUGUU - 40
Evidence	experimental Illumina [1]

Mature cli-miR-7a-2-3p

Accession	MIMAT0038398
Description	Columba livia cli-miR-7a-2-3p mature miRNA
Sequence	59 - CAACAAGUCACAGUCUGCCCUA - 80
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196