miRBase entry: cli-mir-15c

Stem-loop cli-mir-15c


Accession
MI0029908
Description
Columba livia cli-mir-15c precursor miRNA


Sequence

gggcuuugaggagaugUAGCAGCACAUCAUGGUUUGUAgggacaaggagauaCAGACCAUUCUGGGCUGCCUCAuuaccucaaggaua
...((((((((.((((..(((((.((..((((((((((............))))))))))..)).)))))..)))).))))))))...

Structure
ggg        a    UA     A  UC          gggac 
   cuuugagg gaug  GCAGC CA  AUGGUUUGUA     a
   |||||||| ||||  ||||| ||  ||||||||||      
   ggaacucc uuAC  CGUCG GU  UACCAGACau     a
aua        a    UC     G  CU          agagg 


Annotation confidence Not enough data
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Genome context
KB375349.1: 3554757-3554844 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cli-mir-15c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cli-miR-15c-5p

Accession MIMAT0038414
Description Columba livia cli-miR-15c-5p mature miRNA
Sequence 17 - UAGCAGCACAUCAUGGUUUGUA - 38
Evidence experimental
Illumina [1]

Mature cli-miR-15c-3p

Accession MIMAT0038415
Description Columba livia cli-miR-15c-3p mature miRNA
Sequence 53 - CAGACCAUUCUGGGCUGCCUCA - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196