miRBase entry: cli-mir-16b

Stem-loop cli-mir-16b

Accession

MI0029911

Description

Columba livia cli-mir-16b precursor miRNA

Sequence

cugucagcagugcucUAGCAGCACGUAAAUACUGGAGUuuaggauugccuguugcucUCCAGUAUUGCAUUGCUGCUUUagugaggcuggaaa
...(((((..((((..(((((((....((((((((((..((((....)))).....))))))))))....)))))))..))))..)))))...

Structure

cug     ag    cU       CGUA          ---Uu    a 
   ucagc  ugcu  AGCAGCA    AAUACUGGAG     uagg u
   |||||  ||||  |||||||    ||||||||||     ||||  
   ggucg  guga  UCGUCGU    UUAUGACCUc     gucc u
aaa     ga    UU       UACG          ucguu    g

Annotation confidence Not enough data

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Genome context

KB375349.1: 3554281-3554373 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-mir-16b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-16b-5p

Accession	MIMAT0038419
Description	Columba livia cli-miR-16b-5p mature miRNA
Sequence	16 - UAGCAGCACGUAAAUACUGGAGU - 38
Evidence	experimental Illumina [1]

Mature cli-miR-16b-3p

Accession	MIMAT0038420
Description	Columba livia cli-miR-16b-3p mature miRNA
Sequence	58 - UCCAGUAUUGCAUUGCUGCUUU - 79
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196