miRBase entry: cli-mir-17

Stem-loop cli-mir-17


Accession
MI0029912
Description
Columba livia cli-mir-17 precursor miRNA


Sequence

ugcgucagaguaauguCAAAGUGCUUACAGUGCAGGUAgugauauauagaaccuACUGCAGUGAAGGCACUUGUAGCauuauguugacagc
.(((((((.(((((((..((((((((.((.(((((...((..........))...))))).)).))))))))...))))))).))))).))

Structure
u  -     a       -CA        A  G     GUA  gaua 
 gc gucag guaaugu   AAGUGCUU CA UGCAG   gu    u
 || ||||| |||||||   |||||||| || |||||   ||     
 cg caguu uauuaCG   UUCACGGA GU ACGUC   ca    a
-  a     g       AUG        A  G     Auc  agau 


Annotation confidence Not enough data
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Genome context
KB375488.1: 2837957-2838047 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from cli-mir-17
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cli-miR-17-5p

Accession MIMAT0038421
Description Columba livia cli-miR-17-5p mature miRNA
Sequence 17 - CAAAGUGCUUACAGUGCAGGUA - 38
Evidence experimental
Illumina [1]

Mature cli-miR-17-3p

Accession MIMAT0038422
Description Columba livia cli-miR-17-3p mature miRNA
Sequence 55 - ACUGCAGUGAAGGCACUUGUAGC - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196