miRBase entry: cli-mir-23b

Stem-loop cli-mir-23b

Accession

MI0029922

Description

Columba livia cli-mir-23b precursor miRNA

Sequence

guuguggcuguuUGGGUUCCUGGCAUGAUGAUUUgugacuuaagauuaaaAUCACAUUGCCAGGGAUUACCACAcagccauuac
((.((((((((.(((((((((((((((.((((((..............)))))))).))))))))))..))).)))))))).))

Structure

  u        u   --          -  A      gugacu 
gu guggcugu UGG  GUUCCUGGCA UG UGAUUU      u
|| |||||||| |||  |||||||||| || ||||||       
ca uaccgacA ACC  UAGGGACCGU AC ACUAaa      a
  u        C   AU          U  -      auuaga

Annotation confidence Not enough data

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Genome context

KB375520.1: 156759-156842 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-mir-23b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-23b-5p

Accession	MIMAT0038440
Description	Columba livia cli-miR-23b-5p mature miRNA
Sequence	13 - UGGGUUCCUGGCAUGAUGAUUU - 34
Evidence	experimental Illumina [1]

Mature cli-miR-23b-3p

Accession	MIMAT0038441
Description	Columba livia cli-miR-23b-3p mature miRNA
Sequence	51 - AUCACAUUGCCAGGGAUUACCACA - 74
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196