miRBase entry: cli-mir-30e

Stem-loop cli-mir-30e

Accession

MI0029934

Description

Columba livia cli-mir-30e precursor miRNA

Sequence

guccuugcugcUGUAAACAUCCUUGACUGGAAGCUgugaggugcgagcaggagCUUUCAGUCGGAUGUUUGCAGCagcaggcug
...(((((((((((((((((((..(((((((((((.(...((....)).).))))))))))))))))))))))))))))))...

Structure

guc                   UU           g gag  g 
   cuugcugcUGUAAACAUCC  GACUGGAAGCU u   gu c
   |||||||||||||||||||  ||||||||||| |   ||  
   ggacgaCGACGUUUGUAGG  CUGACUUUCga g   cg g
guc                   --           g --a  a

Annotation confidence Not enough data

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Genome context

KB375684.1: 336851-336934 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-mir-30e

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-30e-5p

Accession	MIMAT0038458
Description	Columba livia cli-miR-30e-5p mature miRNA
Sequence	12 - UGUAAACAUCCUUGACUGGAAGCU - 35
Evidence	experimental Illumina [1]

Mature cli-miR-30e-3p

Accession	MIMAT0038459
Description	Columba livia cli-miR-30e-3p mature miRNA
Sequence	54 - CUUUCAGUCGGAUGUUUGCAGC - 75
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196