miRBase entry: cli-mir-106

Stem-loop cli-mir-106

Accession

MI0029951

Description

Columba livia cli-mir-106 precursor miRNA

Sequence

uugaguugugcAAAAGUGCUUACAGUGCAGGUAGaguuuaggaucuACUGCAGUAUAAGCACUUCUGGcau
.......((((..(((((((((.(.(((((.((((........))))))))).).)))))))))...))))

Structure

uugaguu    -AA         C G     G    guu 
       gugc   AAGUGCUUA A UGCAG UAGa   u
       ||||   ||||||||| | ||||| ||||    
       uacG   UUCACGAAU U ACGUC Aucu   a
-------    GUC         A G     -    agg

Annotation confidence Not enough data

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Genome context

KB375349.1: 3452467-3452537 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cli-mir-106

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-106-5p

Accession	MIMAT0038487
Description	Columba livia cli-miR-106-5p mature miRNA
Sequence	12 - AAAAGUGCUUACAGUGCAGGUAG - 34
Evidence	experimental Illumina [1]

Mature cli-miR-106-3p

Accession	MIMAT0038488
Description	Columba livia cli-miR-106-3p mature miRNA
Sequence	47 - ACUGCAGUAUAAGCACUUCUGG - 68
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196