miRBase entry: cli-mir-133b

Stem-loop cli-mir-133b


Accession
MI0029966
Description
Columba livia cli-mir-133b precursor miRNA


Sequence

uaugcucugcucugGCUGGUCAAACGGAACCAAGCCcaucuuccucggaggUUUGGUCCCCUUCAACCAGCUAuagcaguguuga
...((.(((((.((((((((..((.((.((((((((..(((.....))))))))))).)).))..)))))))).))))).))...

Structure
uau  u     c        CA  C  A        ca   u 
   gc cugcu ugGCUGGU  AA GG ACCAAGCC  ucu c
   || ||||| ||||||||  || || ||||||||  ||| c
   ug gacga AUCGACCA  UU CC UGGUUUgg  agg u
agu  u     u        AC  C  C        --   c 


Annotation confidence Not enough data
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Genome context
KB375390.1: 6645-6729 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cli-mir-133b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cli-miR-133b-5p

Accession MIMAT0038511
Description Columba livia cli-miR-133b-5p mature miRNA
Sequence 15 - GCUGGUCAAACGGAACCAAGCC - 36
Evidence experimental
Illumina [1]

Mature cli-miR-133b-3p

Accession MIMAT0038512
Description Columba livia cli-miR-133b-3p mature miRNA
Sequence 52 - UUUGGUCCCCUUCAACCAGCUA - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196