miRBase entry: cli-mir-139

Stem-loop cli-mir-139


Accession
MI0029975
Description
Columba livia cli-mir-139 precursor miRNA


Sequence

ccaggccuggcuguauUCUACAGUGCAUGUGUCUCCAGUgugaguaagugacUGGAGAUGCAGCCCUGUUGGAAUaacaaccgggaccaca
...(((((((.((((((((((((.((.((((((((((((...........)))))))))))))).))).)))))).))).))))).))...

Structure
cca  -     c   -      -   U  A            guga 
   gg ccugg ugu auUCUA CAG GC UGUGUCUCCAGU    g
   || ||||| ||| |||||| ||| || ||||||||||||    u
   cc gggcc aca UAAGGU GUC CG ACGUAGAGGUca    a
aca  a     a   a      U   C  -            guga 


Annotation confidence Not enough data
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Genome context
KB376564.1: 18329-18419 [+]

Database links

Mature cli-miR-139-5p

Accession MIMAT0038525
Description Columba livia cli-miR-139-5p mature miRNA
Sequence 17 - UCUACAGUGCAUGUGUCUCCAGU - 39
Evidence experimental
Illumina [1]

Mature cli-miR-139-3p

Accession MIMAT0038526
Description Columba livia cli-miR-139-3p mature miRNA
Sequence 53 - UGGAGAUGCAGCCCUGUUGGAAU - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196