miRBase entry: cli-mir-365-1

Stem-loop cli-mir-365-1

Accession

MI0030035

Description

Columba livia cli-mir-365-1 precursor miRNA

Sequence

accgcagggaaaaugAGGGACUUUUGGGGGCAGAUGUGuuuccauuacacuaucaUAAUGCCCCUAAAAAUCCUUAuugcucuugcagu
...((((((..((((((((..((((((((((((((((((.......)))).)))....))))))))))).))))))))..))))))...

Structure

acc      aa        AC           ----   -    uu 
   gcaggg  aaugAGGG  UUUUGGGGGCA    GAU GUGu  c
   ||||||  ||||||||  |||||||||||    ||| ||||  c
   cguucu  uuAUUCCU  AAAAUCCCCGU    cua caca  a
uga      cg        -A           AAUa   u    uu

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

KB375532.1: 992939-993027 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-mir-365-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-365-5p

Accession	MIMAT0038624
Description	Columba livia cli-miR-365-5p mature miRNA
Sequence	16 - AGGGACUUUUGGGGGCAGAUGUG - 38
Evidence	experimental Illumina [1]

Mature cli-miR-365-3p

Accession	MIMAT0038625
Description	Columba livia cli-miR-365-3p mature miRNA
Sequence	56 - UAAUGCCCCUAAAAAUCCUUA - 76
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196