miRBase entry: cli-mir-449d

Stem-loop cli-mir-449d


Accession
MI0030045
Description
Columba livia cli-mir-449d precursor miRNA


Sequence

guguguggugaugAGGCAGUGUAUUGUUAGUUAGCUGuucuucauacaccaGCAACUGACUACACUGCCACAucaacacaucacugaga
(((((((.(((((.(((((((((..(((((((.((((............)))))))))))))))))))).))))).)))).))).....

Structure
-----   -    g     A         UU       A    uucuu 
     gug ugug ugaug GGCAGUGUA  GUUAGUU GCUG     c
     ||| |||| ||||| |||||||||  ||||||| ||||      
     cac acac acuAC CCGUCACAU  CAGUCAA CGac     a
agagu   u    a     A         --       -    cacau 


Annotation confidence Not enough data
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Genome context
KB375359.1: 2802140-2802228 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from cli-mir-449d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cli-miR-449d-5p

Accession MIMAT0038641
Description Columba livia cli-miR-449d-5p mature miRNA
Sequence 14 - AGGCAGUGUAUUGUUAGUUAGCUG - 37
Evidence experimental
Illumina [1]

Mature cli-miR-449d-3p

Accession MIMAT0038642
Description Columba livia cli-miR-449d-3p mature miRNA
Sequence 52 - GCAACUGACUACACUGCCACA - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196