miRBase entry: cli-mir-875

Stem-loop cli-mir-875


Accession
MI0030061
Description
Columba livia cli-mir-875 precursor miRNA


Sequence

uuagugguacAAUACCUCAGUCUUUUCGGAUGuucuauaaauucaCCUGGAAAUACUGAGGUUGCGUuucacugaac
(((((((.((...((((((((.(((((((.((...........)).))))))).))))))))...)).)))))))..

Structure
--       u  AAU        C       A  uucu 
  uuagugg ac   ACCUCAGU UUUUCGG UG    a
  ||||||| ||   |||||||| ||||||| ||    u
  agucacu UG   UGGAGUCA AAAGGUC ac    a
ca       u  CGU        U       C  uuaa 


Annotation confidence Not enough data
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Genome context
KB375314.1: 1574513-1574589 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cli-mir-875
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cli-miR-875-5p

Accession MIMAT0038668
Description Columba livia cli-miR-875-5p mature miRNA
Sequence 11 - AAUACCUCAGUCUUUUCGGAUG - 32
Evidence experimental
Illumina [1]

Mature cli-miR-875-3p

Accession MIMAT0038669
Description Columba livia cli-miR-875-3p mature miRNA
Sequence 46 - CCUGGAAAUACUGAGGUUGCGU - 67
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196