miRBase entry: cli-mir-9641

Stem-loop cli-mir-9641


Accession
MI0030121
Description
Columba livia cli-mir-9641 precursor miRNA


Sequence

gucggcugcucgggaaCCGCUGGCACGUUGGAGCCCUCGCCuuugugccucucggCGAGCGUGAUGUGCCACGGCUCucgucggccuguc
...(((((..(((((.(((.(((((((((...((.((((((............)))))).)))))))))))))).))))).)))))....

Structure
-guc     cu     a   C         GGA  C      uuugu 
    ggcug  cggga CCG UGGCACGUU   GC CUCGCC     g
    |||||  ||||| ||| |||||||||   || ||||||      
    ccggc  gcuCU GGC ACCGUGUAG   UG GAGCgg     c
cugu     -u     C   -         ---  C      cucuc 


Annotation confidence Not enough data
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Genome context
KB375748.1: 504479-504568 [+]

Database links

Mature cli-miR-9641-5p

Accession MIMAT0038775
Description Columba livia cli-miR-9641-5p mature miRNA
Sequence 17 - CCGCUGGCACGUUGGAGCCCUCGCC - 41
Evidence experimental
Illumina [1]

Mature cli-miR-9641-3p

Accession MIMAT0038776
Description Columba livia cli-miR-9641-3p mature miRNA
Sequence 56 - CGAGCGUGAUGUGCCACGGCUC - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196