Stem-loop pbv-let-7a-1

Accession

MI0030130

Description

Python bivittatus pbv-let-7a-1 precursor miRNA

Sequence

cugcucugugggaUGAGGUAGUAGGUUGUAUAGUUuuagggucauacccaccacugggagauaaCUAUACAGUCUACUGUCUUUCcuaaggaggcaga
(((((((.(((((.(((((((((((((((((((((.....(((...((((....)))).))))))))))))))))))))))))))))).))).)))).

Structure

-    -   g     U                     uuagg   aua    c 
 cugc ucu uggga GAGGUAGUAGGUUGUAUAGUU     guc   ccca c
 |||| ||| ||||| |||||||||||||||||||||     |||   ||||  
 gacg agg aucCU UUCUGUCAUCUGACAUAUCaa     uag   gggu a
a    g   a     -                     -----   --a    c 

Annotation confidence Not enough data

Genome context

KE953102.1: 568866-568963 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pbv-let-7a-1

Mature pbv-let-7a-5p

• Accession: MIMAT0038793
• Description: Python bivittatus pbv-let-7a-5p mature miRNA
• Sequence: 14 - UGAGGUAGUAGGUUGUAUAGUU - 35
• Evidence: experimental ; Illumina [1]

Mature pbv-let-7a-3p

• Accession: MIMAT0038794
• Description: Python bivittatus pbv-let-7a-3p mature miRNA
• Sequence: 65 - CUAUACAGUCUACUGUCUUUC - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196