Stem-loop pbv-let-7c-1

Accession

MI0030134

Description

Python bivittatus pbv-let-7c-1 precursor miRNA

Sequence

gugugcauccggguUGAGGUAGUAGGUUGUAUGGUUuagaauuacacccaggaguuaaCUGUACAACCUUCUAGCUUUCCuuggagcacacuuga
((((((.((((((..(((.(((.(((((((((((((...(((..(.....)..)))))))))))))))).))).)))..))))))))))))....

Structure

----      a      uU   G   U             uag   ua a 
    gugugc uccggg  GAG UAG AGGUUGUAUGGUU   aau  c c
    |||||| ||||||  ||| ||| |||||||||||||   |||  | c
    cacacg agguuC  UUC AUC UCCAACAUGUCaa   uug  g c
aguu      -      CU   G   U             ---   ag a 

Annotation confidence Not enough data

Genome context

KE953041.1: 92834-92928 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pbv-let-7c-1

Mature pbv-let-7c-5p

• Accession: MIMAT0038798
• Description: Python bivittatus pbv-let-7c-5p mature miRNA
• Sequence: 15 - UGAGGUAGUAGGUUGUAUGGUU - 36
• Evidence: experimental ; Illumina [1]

Mature pbv-let-7c-3p

• Accession: MIMAT0038799
• Description: Python bivittatus pbv-let-7c-3p mature miRNA
• Sequence: 59 - CUGUACAACCUUCUAGCUUUCC - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196