miRBase entry: pbv-let-7c-2

Stem-loop pbv-let-7c-2

Accession

MI0030135

Description

Python bivittatus pbv-let-7c-2 precursor miRNA

Sequence

gcgugccucguguUGAGGUAGUAGGUUGUAUGGUUgagaauaacaccaucaggagauaaCUAUACAGCCUCCUAGCUUUCCcugaggcaucgcca
((((((((((.(..(((.(((.((((((((((((((.........((....))...)))))))))))))).))).)))..).))))))).)))..

Structure

--   -       u uU   G   U              agaauaaca  a 
  gcg ugccucg g  GAG UAG AGGUUGUAUGGUUg         cc u
  ||| ||||||| |  ||| ||| ||||||||||||||         ||  
  cgc acggagu C  UUC AUC UCCGACAUAUCaau         gg c
ac   u       c CU   G   C              ------aga  a

Annotation confidence Not enough data

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Genome context

KE959282.1: 26477-26571 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pbv-let-7c-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pbv-let-7c-5p

Accession	MIMAT0038798
Description	Python bivittatus pbv-let-7c-5p mature miRNA
Sequence	14 - UGAGGUAGUAGGUUGUAUGGUU - 35
Evidence	experimental Illumina [1]

Mature pbv-let-7c-2-3p

Accession	MIMAT0038800
Description	Python bivittatus pbv-let-7c-2-3p mature miRNA
Sequence	60 - CUAUACAGCCUCCUAGCUUUCC - 81
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196