miRBase entry: pbv-let-7d

Stem-loop pbv-let-7d

Accession

MI0030137

Description

Python bivittatus pbv-let-7d precursor miRNA

Sequence

ggguuccuaggaAGAGGUAGUAGGUUGCAUAGUUuuagggcagugguuuugccuauaaggaguuaaCUAUACAACCUGCUGCCUUUCUuagggcu
.(((.(((((((.((((((((((((((.(((((((((((((((.....)))))).)))......)))))).))))))))))))))))))))))))

Structure

g   u       A              C      ------   -      u 
 ggu ccuagga GAGGUAGUAGGUUG AUAGUU      uua gggcag g
 ||| ||||||| |||||||||||||| ||||||      ||| |||||| g
 ucg ggauUCU UUCCGUCGUCCAAC UAUCaa      aau uccguu u
-   -       -              A      uugagg   a      u

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

KE953102.1: 567794-567888 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pbv-let-7d

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pbv-let-7d-5p

Accession	MIMAT0038801
Description	Python bivittatus pbv-let-7d-5p mature miRNA
Sequence	13 - AGAGGUAGUAGGUUGCAUAGUU - 34
Evidence	experimental Illumina [1]

Mature pbv-let-7d-3p

Accession	MIMAT0038802
Description	Python bivittatus pbv-let-7d-3p mature miRNA
Sequence	67 - CUAUACAACCUGCUGCCUUUCU - 88
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196