miRBase entry: pbv-mir-1b

Stem-loop pbv-mir-1b


Accession
MI0030145
Description
Python bivittatus pbv-mir-1b precursor miRNA


Sequence

ucccgagccUACAUACUUCUUCAUAUGCCCAUauggagucggccggcuaUGGAAUGUUAAGAAGUAUGUAUcuuugggaucgac
(((((((..((((((((((((.((((..((((((((......)))..))))).)))).))))))))))))..))))))).....

Structure
-----       cc            C    GC     --   ag 
     ucccgag  UACAUACUUCUU AUAU  CCAUa  ugg  u
     |||||||  |||||||||||| ||||  |||||  |||   
     aggguuu  AUGUAUGAAGAA UGUA  GGUau  gcc  c
cagcu       cU            U    -A     cg   gg 


Annotation confidence Not enough data
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Genome context
KE958846.1: 2683-2766 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from pbv-mir-1b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pbv-miR-1b-5p

Accession MIMAT0038815
Description Python bivittatus pbv-miR-1b-5p mature miRNA
Sequence 10 - UACAUACUUCUUCAUAUGCCCAU - 32
Evidence experimental
Illumina [1]

Mature pbv-miR-1b-3p

Accession MIMAT0038816
Description Python bivittatus pbv-miR-1b-3p mature miRNA
Sequence 50 - UGGAAUGUUAAGAAGUAUGUAU - 71
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196