miRBase entry: pbv-mir-16b

Stem-loop pbv-mir-16b

Accession

MI0030159

Description

Python bivittatus pbv-mir-16b precursor miRNA

Sequence

uacuuguuccgcccUAGCAGCACGUAAAUAUUGGUGuaguaaagauaaucuuaacgCCAAUAUUAUUGUGCUGCUUAAgcgugacagggauu
..((((((.(((...(((((((((..(((((((((((....((((...)))).)))))))))))..)))))))))...))).))))))....

Structure

--ua      c   ccU         UA           agua    u 
    cuuguu cgc   AGCAGCACG  AAUAUUGGUGu    aaga  
    |||||| |||   |||||||||  |||||||||||    |||| a
    ggacag gcg   UCGUCGUGU  UUAUAACCgca    uucu  
uuag      u   AAU         UA           ---a    a

Annotation confidence Not enough data

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Genome context

KE954284.1: 232844-232935 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pbv-mir-16b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pbv-miR-16b-5p

Accession	MIMAT0038834
Description	Python bivittatus pbv-miR-16b-5p mature miRNA
Sequence	15 - UAGCAGCACGUAAAUAUUGGUG - 36
Evidence	experimental Illumina [1]

Mature pbv-miR-16b-3p

Accession	MIMAT0038835
Description	Python bivittatus pbv-miR-16b-3p mature miRNA
Sequence	57 - CCAAUAUUAUUGUGCUGCUUAA - 78
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196