miRBase entry: pbv-mir-17

Stem-loop pbv-mir-17


Accession
MI0030161
Description
Python bivittatus pbv-mir-17 precursor miRNA


Sequence

uguuagaauaauguCAAAGUGCUUACAGUGCAGGUAgugauuuauagaaccuACUGCAGUGAAGGCACUUGUAGCauuaugcuggca
((((((.(((((((..((((((((.((.(((((...((..........))...))))).)).))))))))...))))))).))))))

Structure
      a       -CA        A  G     GUA  gauu 
uguuag auaaugu   AAGUGCUU CA UGCAG   gu    u
|||||| |||||||   |||||||| || |||||   ||     
acgguc uauuaCG   UUCACGGA GU ACGUC   ca    a
      g       AUG        A  G     Auc  agau 


Annotation confidence Not enough data
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Genome context
KE958468.1: 78131-78217 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from pbv-mir-17
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pbv-miR-17-5p

Accession MIMAT0038838
Description Python bivittatus pbv-miR-17-5p mature miRNA
Sequence 15 - CAAAGUGCUUACAGUGCAGGUA - 36
Evidence experimental
Illumina [1]

Mature pbv-miR-17-3p

Accession MIMAT0038839
Description Python bivittatus pbv-miR-17-3p mature miRNA
Sequence 53 - ACUGCAGUGAAGGCACUUGUAGC - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196